SNP Profiles of BE 10 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
1._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
2._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
3._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
4._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
5._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
6._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
7._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
8._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
9._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
10._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
11._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
12._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
13._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
14._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
15._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
16._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
17._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
18._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
19._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
20._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	_	CC	TT	AA	AA	CC	GG
21._BE_10	TT	AA	GG	CC	TT	AA	CC	_	CC	TT	AA	AA	CC	GG
22._GC-08-090-2-13	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
23._BE_10	TT	AA	GG	CC	TT	AA	CC	TT	CC	TT	AA	AA	CC	GG
24._BE_10	TT	AA	GG	CC	_	_	CC	TT	CC	TT	AA	AA	CC	GG
25._GC-08-90-2-13	AA	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
1._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
2._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
3._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
4._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
5._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
6._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
7._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
8._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
9._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
10._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
11._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
12._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
13._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
14._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
15._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
16._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
17._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
18._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
19._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
20._GC-08-090-2-13	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
21._BE_10	TT	AA	GG	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
22._GC-08-090-2-13	TT	AA	GG	_	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
23._BE_10	TT	AA	GG	_	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
24._BE_10	TT	AA	_	_	CC	GG	GG	AA	TT	AA	CC	TT	TT	_
25._GC-08-90-2-13	AA	AA	GG	AA	GG	CC	CC	_	AA	AA	CC	AA	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
1._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
2._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
3._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
4._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
5._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
6._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
7._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
8._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
9._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
10._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
11._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
12._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
13._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
14._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
15._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
16._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
17._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
18._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
19._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
20._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
21._BE_10	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
22._GC-08-090-2-13	AA	GG	AA	CC	AA	CC	AA	_	TT	CC	TT	GG	X_X	X_X
23._BE_10	AA	GG	AA	CC	AA	CC	AA	_	TT	CC	TT	GG	X_X	X_X
24._BE_10	AA	GG	AA	_	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
25._GC-08-90-2-13	_	GG	AA	GG	AA	GG	AA	GG	AA	CC	TT	GG	X_X	X_X

Input profile: BE_10

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 13

Dapeng Zhang, 2016

1._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

3._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

4._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

7._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

11._BE_10 GC-08-090-2-13

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 6

Dapeng Zhang, 2016

13._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 7

Dapeng Zhang, 2016

14._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 8

Dapeng Zhang, 2016

15._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 9

Dapeng Zhang, 2016

16._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 11

Dapeng Zhang, 2016

17._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 14

Dapeng Zhang, 2016

18._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 1 > FP

Dapeng Zhang, 2016

19._BE_10

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 4 > FP

Dapeng Zhang, 2016

20._BE_10 GC-08-090-2-13

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

21._BE_10

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 2 > FP

Dapeng Zhang, 2016

22._BE_10 GC-08-090-2-13

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

23._BE_10

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8213 3 > FP

Dapeng Zhang, 2016

24._BE_10

97.1 %
34 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/467 T1

Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership - Sample

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25